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Graft-versus-host disease prophylaxis shapes T cell biology and immune reconstitution after hematopoietic cell transplant

Siegel et al.
medRxiv
January 2026
Authors and Affiliates
Steven J. Siegel, Susan DeWolf, Joseph Schmalz, Wael Saber, Jiayi Dong, Michael J. Martens, Brent Logan, Alexandre Albanese, Lorenzo Iovino, Edward Chen, James Kaminski, Donna Neuberg, Kyle Hebert, Paula Keskula, Jillian Zavistaski, Lea Steinberg, Isabella Schichter, Lorenzo Cagnin, Vanessa Hernandez, Makya Warren, Kristy Applegate, Merav Bar, Saurabh Chhabra, Sung Won Choi, William Clark, Suman Das, Robert Jenq, Richard J. Jones, John E. Levine, Hemant Murthy, Armin Rashidi, Marcie Riches, Karamjeet Sandhu, Anthony D. Sung, Karilyn Larkin, Monzr M. Al Malki, Mahasweta Gooptu, Hany Elmariah, Amin Alousi, Lyndsey Runaas, Brian Shaffer, Andrew Rezvani, Najla El Jurdi, Alison W. Loren, Danielle Scheffey, Catherine Sanders, Mehdi Hamadani, Jarrod Dudakov, Stephanie Bien, Harlan Robins, Mary Horowitz, Javier Bolaños-Meade, Shernan Holtan, Ami S. Bhatt, Miguel-Angel Perales, Leslie S. Kean.

Antigen-driven expansion of public clonal T-cell populations in inflammatory bowel diseases

Mitchell Pesesky, et al.
Journal of Crohn's and Colitis
March 2025
Authors and Affiliates
Mitchell Pesesky, Ramit Bharanikumar, Lionel Le Bourhis, Hesham ElAbd, Elisa Rosati, Cara L Carty, Namita Singh, Bernd Bokemeyer, Stefan Schreiber, Siegfried Görg, Marco Garcia Noceda, Paidamoyo Chapfuwa, Rachel M Gittelman, Damon May, Jennifer N Dines, Wenyu Zhou, Ian M Kaplan, Thomas M Snyder, Harus Jabran Zahid, Julia Greissl, Haiyin Chen-Harris, Bryan Howie, Andre Franke, Harlan S Robins, Matthieu Allez

Large-scale statistical mapping of T-cell receptor β sequences to Human Leukocyte Antigens

H. Jabran Zahid, et al.
bioRxiv
Pre-Print
April 2024
Authors and Affiliates
H. Jabran Zahid 1, Ruth Taniguchi 2, Peter Ebert 2, I-Ting Chow 2, Chris Gooley 1, Jinpeng Lv 1, Lorenzo Pisani 1, Mikaela Rusnak 2,Rebecca Elyanow 2, Hiroyuki Takamatsu 3, Wenyu Zhou 2, Julia Greissl 1, Harlan Robins 2 and Jonathan M. Carlson 1; 1 Microsoft Research - 14820 NE 36th St, Redmond, WA 98052; 2 Adaptive Biotechnologies - 1165 Eastlake Ave E, Seattle, WA 98109; 3 Faculty of Transdisciplinary Sciences for Innovation, Institute of Transdisciplinary Sciences for Innovation/ Department of Hematology, Kanazawa University, Kakumamachi, Kanazawa, Ishikawa 920-1192, Japan.

NKG2D receptor signaling shapes T cell thymic education

Perez C, et al.
journal of leukocyte biology
December 2023
Authors and Affiliates
Cynthia Perez 1, Lourdes Plaza-Rojas 2, Justin C Boucher 2, Mate Z Nagy 2, Elena Kostenko 2, Kushal Prajapati 1, Brianna Burke 1, Michael Delos Reyes 1, Anna L Austin 2, Shubin Zhang 1,3, Phong T Le 1,3, José A Guevara-Patino 1,2; 1 Department of Cancer Biology, Loyola University Chicago, 2160 S. First Ave, Maywood, IL 60153, United States. 2 Department of Immunology, H. Lee Moffitt Cancer Center and Research Institute, 12902 Magnolia Drive, Tampa, FL 33612, United States. 3 Department of Microbiology and Immunology, Loyola University Chicago, 2160 S. First Ave, Maywood, IL 60153, United States.

The Cyclin D3 Protein Enforces Monogenic TCRβ Expression by Mediating TCRβ Protein-Signaled Feedback Inhibition of Vβ Recombination

Culberson EJ, at al.
Journal of Immunology
December 2023
Authors and Affiliates
Erica J Culberson 1, Kymberle C Shields 1, Rebecca A Glynn 1,2, Brittney M Allyn 1,3, Katharina E Hayer 1,4,5, Craig H Bassing 1,2,3; 1 Department of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA. 2 Cell and Molecular Biology Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA. 3 Immunology Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA. 4 Biomedical Engineering Doctoral Degree Program, School of Biomedical Engineering, Science and Health Systems, Drexel University, Philadelphia, PA. 5 Department of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Perelman School of Medicine, Philadelphia, PA.

TCRseq Reveals Selected Donor-reactive CD8+ T cell Clones Resist Anti-Thymocyte Globulin Depletion after Kidney Transplantation

Ningoo M, et al.
American Journal of Transplantation
December 2023
Authors and Affiliates
Mehek Ningoo 1, Pamela Cruz-Encarnación 1, Calla Khilnani 1, Peter S Heeger 2, Miguel Fribourg 3; 1 Translational Transplant Research Center, Division of Nephrology, Department of Medicine; Immunology Institute Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA. 2 Comprehensive Transplant Center, Cedars-Sinai Medical Center, Los Angeles, CA, 90048, USA. 3 Translational Transplant Research Center, Division of Nephrology, Department of Medicine; Immunology Institute Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA. Electronic address: miguel.fribourg@mssm.edu.

Plasticity of intragraft alloreactive T cell clones in human gut correlates with transplant outcomes

Fu J, et al.
Journal of Experimental Medicine
December 2023
immuneAccess
Authors and Affiliates
Jianing Fu 1, Zicheng Wang 2, Mercedes Martinez 3, Aleksandar Obradovic 1, Wenyu Jiao 1, Kristjana Frangaj 1, Rebecca Jones 1, Xinzheng V Guo 4, Ya Zhang 4, Wan-I Kuo 4, Huaibin M Ko 5, Alina Iuga 5, Constanza Bay Muntnich 1, Adriana Prada Rey 1, Kortney Rogers 1, Julien Zuber 1, Wenji Ma 2, Michelle Miron 6, Donna L Farber 6,7, Joshua Weiner 1,7, Tomoaki Kato 7, Yufeng Shen 2, Megan Sykes 1,6,7; 1 Department of Medicine, Columbia Center for Translational Immunology, Columbia University, New York, NY, USA. 2Department of Systems Biology, Center for Computational Biology and Bioinformatics, Columbia University, New York, NY, USA. 3 Department of Pediatrics, Columbia University, New York, NY, USA. 4 Human Immune Monitoring Core, Herbert Irving Comprehensive Cancer Center, Columbia University , New York, NY, USA. 5 Department of Pathology and Cell Biology, Columbia University, New York, NY, USA. 6 Department of Microbiology and Immunology, Columbia University, New York, NY, USA. 7 Department of Surgery, Columbia University, New York, NY, USA.
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