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Immunodynamics: a cancer immunotherapy trials network review of immune monitoring in immuno-oncology clinical trials

Kohrt et al.
Journal for ImmunoTherapy of Cancer
Journal of Immunotherapy
Papers
May 2016
Authors and Affiliates
Holbrook E. Kohrt1, Paul C. Tumeh2, Don Benson3, Nina Bhardwaj4, Joshua Brody5, Silvia Formenti6, Bernard A. Fox7, Jerome Galon8, Carl H. June9, Michael Kalos10, Ilan Kirsch11, Thomas Kleen12, Guido Kroemer13, Lewis Lanier14, Ron Levy15, H. Kim Lyerly16, Holden Maecker17, Aurelien Marabelle18, Jos Melenhorst19, Jeffrey Miller20, Ignacio Melero21, Kunle Odunsi22, Karolina Palucka23, George Peoples24, Antoni Ribas25, Harlan Robins26, William Robinson27, Tito Serafini28, Paul Sondel29, Eric Vivier30, Jeff Weber31, Jedd Wolchok32, Laurence Zitvogel33, Mary L. Disis34, Martin A. Cheever35 and on behalf of the Cancer Immunotherapy Trials Network (CITN) 1Division of Oncology, Stanford Cancer Institute, Stanford University Medical Center, Stanford, CA, USA.2Division of Dermatology, Department of Medicine, University of California Los Angeles, Los Angeles, CA USA.3Division of Hematology/Oncology, Ohio State University, Columbus, OH USA.4Medicine, Hematology and Medical Oncology, Mount Sinai Hospital, New York, NY USA.5Medicine, Hematology and Medical Oncology, Mount Sinai Hospital, Ruttenberg Treatment Center, New York, NY USA. 6Department of Radiation Oncology, New York Weill Cornell Medical Center, New York, NY USA.7SOM-Molecular Microbiology & Immunology Department, Laboratory of Molecular and Tumor Immunology, OHSU Cancer Institute, Portland, OR USA. 8INSERM, Integrative Cancer Immunology Team, Cordeliers Research Center, Paris, France. 9Perelman School of Medicine, University of Pennsylvania, Pathology and Laboratory Medicine, Philadelphia, PA USA.10Cancer Immunobiology, Eli Lilly & Company, New York, NY USA. 11Translational Medicine, Adaptive Biotechnologies Corp, Seattle, WA USA. 12Immune Monitoring, Epiontis GmbH, Berlin, Germany. 13Faculty of Medicine, University of Paris Descartes, Paris, France. 14Department of Microbiology and Immunology, University of California, San Francisco, CA USA. 15Division of Oncology, Stanford School of Medicine, Stanford, CA USA. 16Duke University School of Medicine, Durham, NC USA. 17Human Immune Monitoring Center Shared Resource, Stanford Cancer Institute, Stanford, CA USA.18Léon Bérard Cancer Center, Lyon, France. 19Product Development and Correlative Sciences, Smilow Center for Translational Research, Philadelphia, PA USA. 20Division of Hematology, Experimental Therapeutics, University of Minnesota, Oncology and Transplantation, Minneapolis, MN USA. 21Centro de Investigacion Medica Aplicada, Universidad de Navarra, Avda. Pamplona, Spain. 22Center for Immunotherapy, Roswell Park Cancer Institute, Buffalo, NY USA. 23Baylor Institute for Immunology Research, Dallas, TX USA. 24Cancer Vaccine Development Program, Brooke Army Medical Center, Houston, TX USA. 25Tumor Immunology Program Area, Jonsson Comprehensive Cancer Center, University of California, Los Angeles, CA USA. 26Adaptive Biotechnologies, Seattle, WA USA. 27Division of Immunology and Rheumatology, Department of Medicine, Stanford University School of Medicine, Stanford, CA USA. 28Atreca, Inc, Redwood City, CA USA. 29Cellular & Molecular Pathology Graduate Program, University of Wisconsin-Madison, Madison, WI USA. 30Centre d'Immunologie de Marseille-Luminy, Marseille, France. 31Moffitt Cancer Center, Tampa, FL USA. 32Immunology Program, Memorial Sloan-Kettering Cancer Center, New York, NY USA. 33Institut National de la Santé et Recherche Médicale, Institut GrustaveRoussy, Villejuif, France. 34Tumor Vaccine Group, University of Washington, Seattle, WA USA.35Fred Hutchinson Cancer Research Center, Seattle, WA 98109-1023 USA.

High-throughput sequencing reveals restricted TCR VB usage and public TCRB clonotypes among pancreatic lymph node memory CD4+ T cells and their involvement in autoimmune diabetes

Marrero et al.
Molecular Immunology
Papers
May 2016
Authors and Affiliates
Idania Marrero,a,b Carlos Aguileraa,1 David E. Hamm,c Anthony Quinn,d Vipin Kumar,a,b aTorrey Pines Institute for Molecular Studies, 3550 General Atomics Court, San Diego, CA 92121, USA bDepartment of Medicine, University of California San Diego, La Jolla, CA 92037, USA cAdaptive Biotechnologies, 1551 Eastlake Ave E #200, Seattle, WA 98102, USA dDepartment of Biological Sciences, University of Toledo, 2801 W Bancroft St., Toledo, OH 43606, USA

Clonal expansion of CD4+ cytotoxic T lymphocytes in patients with IgG4-related disease

Mattoo et al.
Papers
The Journal of Allergy and Clinical Immunology
May 2016
Authors and Affiliates
Hamid Mattoo1, Vinay S. Mahajan1, Takashi Maehara2, Vikram Deshpande1, Emanuel Della-Torre1, Zachary S. Wallace1, Maria Kulikova1, Jefte M. Drijvers1, Joe Daccache1, Mollie N. Carruthers1, Flavia Castellino1, James R. Stone1, John H. Stone3, Shiv Pillai4. 1Massachusetts General Hospital, Harvard Medical School, Boston, Mass. 2Massachusetts General Hospital, Harvard Medical School, Boston, Mass; Section of Oral and Maxillofacial Oncology, Division of Maxillofacial Diagnostic and Surgical Sciences, Fukuoka, Japan. 3Massachusetts General Hospital, Harvard Medical School, Boston, Mass. 4Massachusetts General Hospital, Harvard Medical School, Boston, Mass.

CD8+ T-cell pathogenicity in Rasmussen encephalitis elucidated by large-scale T-cell receptor sequencing

Schneider-Hohendorf et al.
Nature Communications
Papers
April 2016
Authors and Affiliates
Tilman Schneider-Hohendorf1, Hema Mohan1, Christian G. Bien2, Johanna Breuer1, Albert Becker3, Dennis Gorlich4, Tanja Kuhlmann5, Guido Widman6, Sebastian Herich1, Christiane Elpers7, Nico Melzer1, Klaus Dornmair8,9,10, Gerhard Kurlemann7, Heinz Wiendl1, & Nicholas Schwab1 1Department of Neurology, University of Munster, Germany. 2 Epilepsy Center Bethel, Bielefeld, Germany. 3 Institute of Neuropathology, University Hospital Bonn, Bonn, Germany. 4 Institute of Biostatistics and Clinical Research, University of Munster, Munster, Germany. 5Department of Neuropathology, University of Munster, Munster, Germany. 6Department of Epileptology, University of Bonn, Bonn, Germany. 7 Children’s Hospital of the University Medical Center, University of Munster, Munster, Germany. 8 Institute for Clinical Neuroimmunology, Ludwig-Maximilians-University Munich, Munich, Germany. 9 Biomedical Center, Ludwig-Maximilians-University Munich, Munich, Germany. 10 Munich Cluster for Systems Neurology (SyNergy), Ludwig-Maximilians-University Munich, Munich, Germany.

Ligase-4 Deficiency Causes Distinctive Immune Abnormalities in Asymptomatic Individuals

Felgentreff et al.
Journal of Clinical Immunology
Papers
April 2016
Authors and Affiliates
Kerstin Felgentreff1,2 & Sachin N. Baxi1 & Yu Nee Lee1 & Kerry Dobbs1 & Lauren A. Henderson1 & Krisztian Csomos3 & Erdyni N. Tsitsikov4 & Mary Armanios5 & Jolan E. Walter1,3 & Luigi D. Notarangelo1,6 1Division of Immunology, Boston Children’s Hospital, Harvard Medical School, Boston, MA, USA. 2 Department of Pediatrics and Adolescent Medicine, Ulm University Medical Center, Ulm, Germany. 3 Pediatric Allergy and Immunology and the Center for Immunology and Inflammatory Diseases, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA. 4 Department of Laboratory Medicine, Boston Children’s Hospital, Harvard Medical School, Boston, MA, USA. 5 Departments of Oncology, Pathology and McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA. 6 Harvard Stem Cell Institute, Harvard University, Boston, MA, USA.

Origin and evolution of the T cell repertoire after posttransplantation cyclophosphamide

Kanakry et al.
Journal of Clinical Investigation
Papers
April 2016
immuneAccess
Authors and Affiliates
Christopher G. Kanakry,1 David G. Coffey,2,3 Andrea M.H. Towlerton,2 Ante Vulic,1 Barry E. Storer,2 Jeffrey Chou,2,3 Cecilia C.S. Yeung,2,4 Christopher D. Gocke,1 Harlan S. Robins,5 Paul V. O’Donnell,2,3 Leo Luznik,1 and Edus H. Warren2,3 1 Sidney Kimmel Comprehensive Cancer Center, The Johns Hopkins University School of Medicine, Baltimore, Maryland, USA. 2 Clinical Research Division, Fred Hutchinson Cancer Research Center (FHCRC), Seattle, Washington, USA. 3 Department of Medicine and 4 Department of Pathology, University of Washington, Seattle, Washington, USA. 5 Public Health Sciences Division, FHCRC, Seattle, Washington, USA.

Conventional and Regulatory CD4+ T Cells That Share Identical TCRs Are Derived from Common Clones

Wolf et al.
Papers
PLOS ONE
April 2016
Authors and Affiliates
Kyle J. Wolf1, Ryan O. Emerson2, Jeanette Pingel1, R. Mark Buller1, Richard J. DiPaolo1 1 Department of Molecular Microbiology and Immunology, Saint Louis University, School of Medicine, Saint Louis, Missouri, United States of America, 2 Adaptive Biotechnologies Corporation, Seattle, Washington, United States of America Abstract Reference

CD19 CAR–T cells of defined CD4+:CD8+ composition in adult B cell ALL patients

Turtle et al.
Papers
The Journal of Clinical Investigation
April 2016
Authors and Affiliates
Cameron J. Turtle,1,2 Laïla-Aïcha Hanafi,1 Carolina Berger,1,2 Theodore A. Gooley,1 Sindhu Cherian,3 Michael Hudecek,1 Daniel Sommermeyer,1Katherine Melville,1 Barbara Pender,1 Tanya M. Budiarto,1 Emily Robinson,1 Natalia N. Steevens,1 Colette Chaney,1 Lorinda Soma,3 Xueyan Chen,3 Cecilia Yeung,3,4 Brent Wood,3,4 Daniel Li,5 Jianhong Cao,1 Shelly Heimfeld,1 Michael C. Jensen,1,6 Stanley R. Riddell,1,2,7 and David G. Maloney1,2 1 Clinical Research Division, Fred Hutchinson Cancer Research Center (FHCRC), Seattle, Washington, USA. 2 Department of Medicine, 3 Department of Laboratory Medicine, and 4 Department of Pathology, University of Washington, Seattle, Washington, USA. 5 Juno Therapeutics, Seattle, Washington, USA. 6 Seattle Children’s Research Institute, Seattle, Washington, USA. 7 Institute for Advanced Study, Technical University of Munich, Munich, Germany

Immune DNA signature of T-cell infiltration in breast tumor exomes

Levy et al.
bioRxiv
Papers
April 2016
Authors and Affiliates
Eric Levy,1,2 Rachel Marty,2,3 Valentina Garate-Calderon,4,5 Brian Woo,6 Michelle Dow,1,2 Ricardo Armisen,4,5 Hannah Carter,3,6,7 Olivier Harismendy,1,6 1Division of Biomedical Informatics, Department of Medicine, University of California San Diego 2Bioinformatics and Systems Biology Graduate Program, University of California San Diego 3Division of Medical Genetics, Department of Medicine, University of California San Diego 4Centro de Investigación y Tratamiento del Cancer, Facultad de Medicina, Universidad de Chile 5Center for Excellence in Precision Medicine, Pfizer Chile 6Moores Cancer Center, University of California San Diego 7Institute for Genomic Medicine, University of California San Diego.
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