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Phillip A Swanson 2nd 1, Marcelino Padilla 1, Wesley Hoyland 1, Kelly McGlinchey 2, Paul A Fields 3, Sagida Bibi 4, Saul N Faust 5, Adrian B McDermott 1, Teresa Lambe # 6, Andrew J Pollard # 4, Nicholas M Durham # 7, Elizabeth J Kelly # 8, AstraZeneca/Oxford/VRC Study Group; 1 Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA. 2 Discovery, Research and Early Development, Oncology R&D, AstraZeneca, Gaithersburg, MD 20878, USA. 3 Adaptive Biotechnologies, Seattle, WA 98102, USA. 4 Oxford Vaccine Group, Department of Paediatrics, University of Oxford, and the NIHR Oxford Biomedical Research Centre, Oxford OX4 6PG, UK. 5 NIHR Southampton Clinical Research Facility and Biomedical Research Centre, University Hospital Southampton NHS Foundation Trust; Faculty of Medicine and Institute for Life Sciences, University of Southampton, Southampton SO16 6YD, UK. 6 The Jenner Institute, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7DQ, UK; Chinese Academy of Medical Science (CAMS) Oxford Institute (COI), University of Oxford, Oxford OX3 7FZ, UK. 7 Translational Medicine, Oncology R&D, AstraZeneca, Gaithersburg, MD 20878, USA. 8 Translational Medicine, Microbial Sciences, Biopharmaceuticals R&D, AstraZeneca, Gaithersburg, MD 20878, USA. # Contributed equally.

Peter M. K. Westcott 1, Nathan J. Sacks 1, Jason M. Schenkel 1,2,3, Zackery A. Ely 1, Olivia Smith 1, Haley Hauck 1, Alex M. Jaeger 1, Daniel Zhang 1, Coralie M. Backlund 1, Mary C. Beytagh 1, J. J. Patten 1, Ryan Elbashir 1, George Eng 1,4, Darrell J. Irvine 1,5,6,7,8, Omer H. Yilmaz 1,4,9 and Tyler Jacks 1,9; 1 David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA. 2 Department of Pathology, Brigham and Women’s Hospital, Boston, MA, USA. 3 Harvard Medical School, Boston, MA, USA. 4 Department of Pathology, Massachusetts General Hospital, Boston, MA, USA. 5 Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA. 6 Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology and Harvard University, Cambridge, MA, USA. 7 Department of Materials Science and Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA. 8 Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, MA, USA. 9 Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.

Isaac Quiros-Fernandez 1, Mansour Poorebrahim 1, Elham Fakhr 1, Angel Cid-Arregui 2; 1 Targeted Tumor Vaccines Group, Clinical Cooperation Unit Applied Tumor Immunity, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120 Heidelberg, Germany. 2 Targeted Tumor Vaccines Group, Clinical Cooperation Unit Applied Tumor Immunity, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120 Heidelberg, Germany. Electronic address: a.cid@dkfz-heidelberg.de.

René Reitermaier 1, Tanya Ayub 1, Julia Staller 1, Philip Kienzl 1, Nikolaus Fortelny 2, Pablo Augusto Vieyra-Garcia 3, Christof Worda 4, Christian Fiala 5 6, Clement Staud 7, Wolfgang Eppel 4, Anke Scharrer 8, Thomas Krausgruber 9, Adelheid Elbe-Bürger 1; 1 Department of Dermatology, Medical University of Vienna, Austria. 2 Department of Biosciences, University of Salzburg, Salzburg, Austria. 3 Department of Dermatology, Medical University of Graz, Graz, Austria. 4 Department of Obstetrics & Gynecology, Medical University of Vienna, Austria. 5 Gynmed Clinic, Vienna, Austria. 6 Department of Women’s and Children’s Health, Division of Obstetrics and Gynaecology, Karolinska Institute and Karolinska University Hospital, Stockholm, Sweden. 7 Department of Surgery, Division of Plastic and Reconstructive Surgery, Medical University of Vienna, Austria. 8 Department of Pathology, Medical University of Vienna, Austria. 9 CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria.

Hector Cordero 1, Rodney G King 2, Pranay Dogra 1,3, Chloe Dufeu 1, Sarah B See 1, Alexander M Chong 4, Anne-Catrin Uhlemann 4, Siu-Hong Ho 1, David M Kalfa 5, Emile A Bacha 5, John F Kearney 2, Emmanuel Zorn 6; 1 Columbia Center for Translational Immunology, Columbia University Medical Center, New York, NY, 10032, USA. 2 Department of Microbiology, University of Alabama at Birmingham, Birmingham, AL, 35294, USA. 3 Department of Microbiology and Immunology, Columbia University Medical Center, New York, NY, 10032, USA. 4 Division of Infectious Diseases in the College of Physicians and Surgeons, Columbia University Medical Center, New York, NY, 10032, USA. 5 Division of Cardiac, Thoracic and Vascular Surgery, Columbia University Medical Center, New York, NY, 10032, USA. 6 Columbia Center for Translational Immunology, Columbia University Medical Center, New York, NY, 10032, USA. ez2184@cumc.columbia.edu.

Tianshi Lu 1,6, Ze Zhang 1,6, James Zhu 1, Yunguan Wang 1, Peixin Jiang 2, Xue Xiao 1, Chantale Bernatchez 3, John V. Heymach 2, Don L. Gibbons 2, Jun Wang 4, Lin Xu 1, Alexandre Reuben 2 and Tao Wang 1,5; 1 Quantitative Biomedical Research Center, Department of Population and Data Sciences, University of Texas Southwestern Medical Center, Dallas, TX, USA. 2 Department of Thoracic/Head and Neck Medical Oncology, MD Anderson Cancer Center, Houston, TX, USA. 3 Department of Melanoma Medical Oncology, MD Anderson Cancer Center, Houston, TX, USA. 4 Department of Pathology, New York University Grossman School of Medicine, New York, NY, USA. 5 Center for the Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, TX, USA. 6 These authors contributed equally: Tianshi Lu, Ze Zhang

Aleksandar Obradovic a,b, Yufeng Shen b, Megan Sykes a,c,d, Jianing Fu a; a Columbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY 10032, United States b Department of Systems Biology, Columbia University, New York, NY 10032, United States c Department of Surgery, Columbia University, New York, NY 10032, United States d Department of Microbiology & Immunology, Columbia University, New York, NY 10032, United States

Jihoon W Lee 1, Yapeng Su 2,3,4, Priyanka Baloni 5, Daniel Chen 5, Ana Jimena Pavlovitch-Bedzyk 6, Dan Yuan 5, Venkata R Duvvuri 5, Rachel H Ng 5, Jongchan Choi 5, Jingyi Xie 5, Rongyu Zhang 5, Kim Murray 5, Sergey Kornilov 5, Brett Smith 5, Andrew T Magis 5, Dave S B Hoon 7, Jennifer J Hadlock 5, Jason D Goldman 8,9,10, Nathan D Price 5,11, Raphael Gottardo 12,13,14, Mark M Davis 6,5,16, Leroy Hood 5,9, Philip D Greenberg 17,18, James R Heath 19,20; 1 Program in Immunology, Clinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA. 2 Program in Immunology, Clinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA. suyapeng.tju@gmail.com. 3 Institute for Systems Biology, Seattle, WA, USA. suyapeng.tju@gmail.com. 4 Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA. suyapeng.tju@gmail.com. 5 Institute for Systems Biology, Seattle, WA, USA. 6 Institute for Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA, USA. 7 St. John’s Cancer Institute at Saint John’s Health Center, Santa Monica, CA, USA. 8 Swedish Center for Research and Innovation, Swedish Medical Center, Seattle, WA, USA. 9 Providence St. Joseph Health, Renton, WA, USA. 10 Division of Allergy & Infectious Diseases, University of Washington, Seattle, WA, USA. 11 Department of Bioengineering, University of Washington, Seattle, WA, USA. 12 Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA. 13 Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA, USA. 14 Department of Statistics, University of Washington, Seattle, WA, USA. 15 Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA. 16 The Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, CA, USA. 17 Program in Immunology, Clinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA. pgreen@uw.edu. 18 Departments of Immunology and Medicine, University of Washington, Seattle, WA, USA. pgreen@uw.edu. 19 Institute for Systems Biology, Seattle, WA, USA. jim.heath@isbscience.org. 20 Department of Bioengineering, University of Washington, Seattle, WA, USA. jim.heath@isbscience.org.

Hema Dave 1, Madeline Terpilowski 2, Mimi Mai 3, Keri Toner 4, Melanie Grant 5, Maja Stanojevic 1, Christopher Andrew Lazarski 2, Abeer Shibli 1, Stephanie Ann Bien 6, Philp Maglo 1, Fahmida Hoq 7, Reuven Schore 4, Martha J Glenn 8, Boyu Hu 9, Patrick J Hanley 2, Richard F Ambinder 10, Catherine M Bollard 4; 1 Children’s National Hospital, Washington, District of Columbia, United States. 2 Children’s National Medical Center, Washington, District of Columbia, United States. 3 The George Washington school of Medicine, United States. 4 The George Washington University School of Medicine, United States. 5 Emory University School of Medicine, United States. 6 Adaptive Biotechnologies, Seattle, Washington, United States. 7 CNMC, Laytonsville, Maryland, United States. 8 University of Utah, Huntsman Cancer Institute, Salt Lake City, Utah, United States. 9 Huntsman Cancer Institute/University of Utah, Salt Lake City, Utah, United States. 10 Johns Hopkins University School of Medicine, Baltimore, Maryland, United States.

Balázs Koncz 1, Gergő M Balogh 1, Benjamin T Papp 1,2, Leó Asztalos 1,2, Lajos Kemény 1,3,4, Máté Manczinger 5,3,4,6; 1 Department of Dermatology and Allergology, University of Szeged, 6720 Szeged, Hungary. 2 Szeged Scientists Academy, 6720 Szeged, Hungary. 3 Magyar Tudományos Akadémia – Szegedi Tudományegyetem (MTA-SZTE) Dermatological Research Group, Eötvös Loránd Research Network (ELKH), University of Szeged, 6720 Szeged, Hungary. 4 Hungarian Centre of Excellence for Molecular Medicine – University of Szeged (HCEMM-USZ) Skin Research Group, 6720 Szeged, Hungary. 5 Department of Dermatology and Allergology, University of Szeged, 6720 Szeged, Hungary; manczinger.mate@med.u-szeged.hu. 6 Biological Research Centre, Institute of Biochemistry, Synthetic and Systems Biology Unit, Eötvös Loránd Research Network (ELKH), 6726 Szeged, Hungary.