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Caridad A Martinez 1, Frederic Ebstein 2, Sarah K Nicholas 3, Marietta De Guzman 3, Lisa R Forbes 3, Ottavia M Delmonte 4, Marita Bosticardo 5, Riccardo Castagnoli 4, Robert Krance 3, Luigi D Notarangelo 6, Elke Krüger 2, Jordan S Orange 7, M Cecilia Poli 8; 1 Texas Children’s Hospital, Houston, Texas, United States. 2 Universitätsmedizin Greifswald, Greifswald, Germany. 3 Texas Children´s Hospital, United States. 4 NIH, Bethesda, Maryland, United States. 5 National Institutes of Health, Bethesda, Maryland, United States. 6 NIAID, National Institutes of Health, Bethesda, Maryland, United States. 7 Columbia University, New York, New York, United States. 8 Baylor College of Medicina, United States.
Beilinson HA, et al.
Journal of Experimental Medicine
August 2021
Helen A Beilinson 1, Rebecca A Glynn 2,3, Anurupa Devi Yadavalli 1,4, Jianxiong Xiao 1, Elizabeth Corbett 1, Huseyin Saribasak 1, Rahul Arya 3, Charline Miot 3, Anamika Bhattacharyya 5, Jessica M Jones 5, Jagan M R Pongubala 4, Craig H Bassing 2,3, David G Schatz 1,6; 1 Department of Immunobiology, Yale School of Medicine, Yale University, New Haven, CT. 2 Cell and Molecular Biology Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA. 3 Department of Pathology and Laboratory Medicine, Children’s Hospital of Philadelphia, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA. 4 Department of Animal Biology, School of Life Sciences, University of Hyderabad, Hyderabad, India. 5 Department of Biochemistry and Molecular & Cellular Biology, Georgetown University, Washington, DC. 6 Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT.
Julia Greissl *,a, Mitch Pesesky *,b, Sudeb C. Dalai b,c, Alison W. Rebman d, Mark J. Soloski d, Elizabeth J. Horn e, Jennifer N. Dines b, Rachel M. Gittelman b, Thomas M. Snyder b, Ryan O. Emerson b, Edward Meeds a, Thomas Manley b, Ian M. Kaplan b, Lance Baldo b, Jonathan M. Carlson a,†, Harlan S. Robins †,b, John N. Aucott †,d; *Julia Greissl and Mitch Pesesky contributed equally to this study. † Jonathan M. Carlson, Harlan S. Robins, and John N. Aucott contributed equally to the oversight of this study. a Microsoft Research, Redmond, Washington, USA, and Cambridge, UK bAdaptive Biotechnologies, Seattle, Washington, USA c Stanford University School of Medicine, Stanford, California, USA d Lyme Disease Research Center, Division of Rheumatology, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA e Lyme Disease Biobank, Portland, Oregon, USA
Sabrina Mazouz 1,2, Maude Boisvert 1, Mohamed S Abdel-Hakeem 1,2, Omar Khedr 1, Julie Bruneau 1,3, Naglaa H Shoukry 4,5; 1 Centre de Recherche du Centre Hospitalier de l’Université de Montréal, Montreal, Quebec, Canada. 2 Département de Microbiologie, Infectiologie et Immunologie, Université de Montreal, Montreal, Quebec, Canada. 3 Département de Médecine Familiale et de Médecine d’Urgence, Université de Montréal, Montreal, Quebec, Canada; and. 4 Centre de Recherche du Centre Hospitalier de l’Université de Montréal, Montreal, Quebec, Canada; naglaa.shoukry@umontreal.ca. 5 Département de Médecine, Université de Montréal, Montreal, Quebec, Canada.
Benjamin C Creelan #,1, Chao Wang #,2, Jamie K Teer 3, Eric M Toloza 2, Jiqiang Yao 3, Sungjune Kim 4, Ana M Landin 5, John E Mullinax 6, James J Saller 7, Andreas N Saltos 2, David R Noyes 4, Leighann B Montoya 8, Wesley Curry 8, Shari A Pilon-Thomas 4, Alberto A Chiappori 2, Tawee Tanvetyanon 2, Frederic J Kaye 9, Zachary J Thompson 2, Sean J Yoder 10, Bin Fang 10, John M Koomen 10, Amod A Sarnaik 2, Dung-Tsa Chen 3, Jose R Conejo-Garcia 2, Eric B Haura #,2, Scott J Antonia #,11; 1 Department of Thoracic Oncology, H. Lee Moffitt Cancer Center & Research Institute, Tampa, FL, USA. ben.creelan@moffitt.org. 2 Department of Thoracic Oncology, H. Lee Moffitt Cancer Center & Research Institute, Tampa, FL, USA. 3 Department of Bioinformatics and Biostatistics, H. Lee Moffitt Cancer Center & Research Institute, Tampa, FL, USA. 4 Department of Immunology, H. Lee Moffitt Cancer Center & Research Institute, Tampa, FL, USA. 5 Cell Therapy Facility, H. Lee Moffitt Cancer Center & Research Institute, Tampa, FL, USA. 6 Department of Sarcoma, H. Lee Moffitt Cancer Center & Research Institute, Tampa, FL, USA. 7 Department of Pathology, H. Lee Moffitt Cancer Center & Research Institute, Tampa, FL, USA. 8 Immune and Cellular Therapy Program, H. Lee Moffitt Cancer Center & Research Institute, Tampa, FL, USA. 9 Department of Medicine, University of Florida College of Medicine, Gainesville, FL, USA. 10 Chemical Biology & Molecular Medicine, H. Lee Moffitt Cancer Center & Research Institute, Tampa, FL, USA. 11 Duke Cancer Institute, Duke University School of Medicine, Durham, NC, USA. # Contributed equally.
Tanya Dorff 1, Yosuke Hirasawa 2, Jared Acoba 3, Ian Pagano 3, David Tamura 3, Sumanta Pal 1, Minlu Zhang 4, Rebecca Waitz 4, Abhilash Dhal 4, Winston Haynes 4, John Shon 4, Mark Scholz 5, Hideki Furuya 2, Owen T M Chan 3, Jeffrey Huang 3, Charles Rosser 6; 1 Department of Medical Oncology and Therapeutics Research, City of Hope National Medical Center, Duarte, California, USA. 2 Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Los Angeles, California, USA. 3 University of Hawaii Cancer Center, Honolulu, Hawaii, USA. 4 Serimmune, Goleta, California, USA. 5 Prostate Oncology Specialists, Marina del Rey, California, USA. 6 Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Los Angeles, California, USA charles.rosser@cshs.org.
Hongyi Zhang 1, Xiaowei Zhan 2, Bo Li 3,4; 1 Lyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, TX, USA. 2 Department of Population and Data Science, UT Southwestern Medical Center, Dallas, TX, USA. 3 Lyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, TX, USA. bo.li@utsouthwestern.edu. 4 Department of Immunology, UT Southwestern Medical Center, Dallas, TX, USA. bo.li@utsouthwestern.edu.
Won Jin Ho 1, Sarah Croessmann 2, Jianping Lin 3, Zaw H Phyo 1, Soren Charmsaz 1, Ludmila Danilova 1, Aditya A Mohan 1, Nicole E Gross 1, Fangluo Chen 1, Jiajun Dong 3, Devesh Aggarwal 3, Yunpeng Bai 3, Janey Wang 4, Jing He 4, James M Leatherman 1, Mark Yarchoan 1, Todd D Armstrong 1, Neeha Zaidi 1, Elana J Fertig 1, Joshua C Denny 4, Ben H Park 2, Zhong-Yin Zhang 3, Elizabeth M Jaffee 5; 1 Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, United States of America. 2 Department of Medicine, Vanderbilt University Medical Center, Nashville, United States of America. 3 Department of Medicinal Chemistry and Molecular Pharmacology, Purdue University, West Lafayette, United States of America. 4 Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, United States of America. 5 Sidney Kimmel Comprehensive Cancer Center, John Hopkins University, Baltimore, United States of America.
Justina X Caushi #,1,2,3, Jiajia Zhang #,1,2,3, Zhicheng Ji 4,5, Ajay Vaghasia 3, Boyang Zhang 4, Emily Han-Chung Hsiue 3,6,7, Brian J Mog 3,6,7, Wenpin Hou 4, Sune Justesen 8, Richard Blosser 1,3, Ada Tam 1,3, Valsamo Anagnostou 1,3, Tricia R Cottrell 1,2,3,9, Haidan Guo 1,2,3, Hok Yee Chan 1,2,3, Dipika Singh 1,2,3, Sampriti Thapa 1,2,3, Arbor G Dykema 1,2,3, Poromendro Burman 1,2,3, Begum Choudhury 1,2,3, Luis Aparicio 1,2,3, Laurene S Cheung 1,2,3, Mara Lanis 1,3, Zineb Belcaid 1,3, Margueritta El Asmar 1,3, Peter B Illei 3, Rulin Wang 3, Jennifer Meyers 3, Kornel Schuebel 3, Anuj Gupta 3, Alyza Skaist 3, Sarah Wheelan 3, Jarushka Naidoo 1,3,10, Kristen A Marrone 1,3, Malcolm Brock 3, Jinny Ha 3, Errol L Bush 3, Bernard J Park 11, Matthew Bott 11, David R Jones 11, Joshua E Reuss 3,12, Victor E Velculescu 1,3, Jamie E Chaft 11, Kenneth W Kinzler 3,6,7, Shibin Zhou 3,6,7, Bert Vogelstein 3,6,7, Janis M Taube 1,2,3, Matthew D Hellmann 11, Julie R Brahmer 1,3, Taha Merghoub 11,13,14, Patrick M Forde 1,3, Srinivasan Yegnasubramanian 15,16,17, Hongkai Ji 18, Drew M Pardoll 19,20,21, Kellie N Smith 22,23,24; 1 Bloomberg~Kimmel Institute for Cancer Immunotherapy at Johns Hopkins, Baltimore, MD, USA. 2 The Mark Center for Advanced Genomics and Imaging at Johns Hopkins, Baltimore, MD, USA. 3 Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins, Baltimore, MD, USA. 4 Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, USA. 5 Department of Biostatistics and Bioinformatics, Duke University School of Medicine, Durham, NC, USA. 6 Ludwig Center and Howard Hughes Medical Institute at Johns Hopkins, Baltimore, MD, USA. 7 Lustgarten Pancreatic Cancer Research Laboratory, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA. 8 Immunitrack, Copenhagen, Denmark. 9 Ontario Institute for Cancer Research, Queens University, Kingston, Ontario, Canada. 10 Beaumont Hospital Dublin, RCSI University of Medicine and Health Science, Dublin, Ireland. 11 Department of Medicine, Memorial Sloan Kettering Cancer Center and Weill Cornell Medicine, New York, NY, USA. 12 Georgetown Lombardi Comprehensive Cancer Center at Georgetown University, Washington, DC, USA. 13 The Swim Across America and Ludwig Collaborative Laboratory, Immunology Program, Parker Institute for Cancer Immunotherapy at Memorial Sloan Kettering Cancer Center, New York, NY, USA. 14 Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA. 15 Bloomberg~Kimmel Institute for Cancer Immunotherapy at Johns Hopkins, Baltimore, MD, USA. syegnasu@jhmi.edu. 16 The Mark Center for Advanced Genomics and Imaging at Johns Hopkins, Baltimore, MD, USA. syegnasu@jhmi.edu. 17 Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins, Baltimore, MD, USA. syegnasu@jhmi.edu. 18 Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, USA. hji@jhu.edu. 19 Bloomberg~Kimmel Institute for Cancer Immunotherapy at Johns Hopkins, Baltimore, MD, USA. dpardol1@jhmi.edu. 20 The Mark Center for Advanced Genomics and Imaging at Johns Hopkins, Baltimore, MD, USA. dpardol1@jhmi.edu. 21 Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins, Baltimore, MD, USA. dpardol1@jhmi.edu. 22 Bloomberg~Kimmel Institute for Cancer Immunotherapy at Johns Hopkins, Baltimore, MD, USA. kellie@jhmi.edu. 23 The Mark Center for Advanced Genomics and Imaging at Johns Hopkins, Baltimore, MD, USA. kellie@jhmi.edu. 24 Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins, Baltimore, MD, USA. kellie@jhmi.edu. # Contributed equally.

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