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Jing Li 1, Maxim Zaslavsky 2, Yapeng Su 3, Jing Guo 4, Michael J Sikora 5, Vincent van Unen 1, Asbjørn Christophersen 6,7,8, Shin-Heng Chiou 1, Liang Chen 1, Jiefu Li 9, Xuhuai Ji 10, Julie Wilhelmy 1, Alana M McSween 1, Brad A Palanski 11, Venkata Vamsee Aditya Mallajosyula 1, Nathan A Bracey 1, Gopal Krishna R Dhondalay 12, Kartik Bhamidipati 13, Joy Pai 13, Lucas B Kipp 14, Jeffrey E Dunn 14, Stephen L Hauser 15, Jorge R Oksenberg 15, Ansuman T Satpathy 16, William H Robinson 17,18, Cornelia L Dekker 19, Lars M Steinmetz 5,20,21, Chaitan Khosla 11,22,23, Paul J Utz 1,18, Ludvig M Sollid 6,7,8,24, Yueh-Hsiu Chien 1,4, James R Heath 3,25, Nielsen Q Fernandez-Becker 26, Kari C Nadeau 1 12, Naresha Saligrama 1, Mark M Davis 1,9,4; 1 Institute of Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA, USA. 2 Program in Computer Science, Stanford University, Stanford, CA, USA. 3 Institute for Systems Biology, Seattle, WA, USA. 4 Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA. 5 Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA. 6 K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway. 7 Institute of Clinical Medicine, University of Oslo, Oslo, Norway. 8 Department of Immunology, University of Oslo, Oslo, Norway. 9 The Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, CA, USA. 10 Human Immune Monitoring Center, Stanford University School of Medicine, Stanford, CA, USA. 11 Department of Chemistry, Stanford University, Stanford, CA, USA. 12 Sean N. Parker Center for Allergy and Asthma Research, Department of Medicine, Stanford University, Stanford, CA, USA. 13 Program in Immunology, Stanford University School of Medicine, Stanford, CA, USA. 14 Division of Neuroimmunology, Department of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford, CA, USA. 15 Department of Neurology and UCSF Weill Institute for Neurosciences, University of California, San Francisco, CA, USA. 16 Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA. 17 VA Palo Alto Health Care System, Palo Alto, CA, USA. 18 Division of Immunology and Rheumatology, Department of Medicine, Stanford University, Stanford, CA, USA. 19 Department of Pediatrics, Stanford University School of Medicine, Stanford, CA, USA. 20 Stanford Genome Technology Center, Stanford University, Palo Alto, CA, USA. 21 European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany. 22 Department of Chemical Engineering, Stanford University, Stanford, CA, USA. 23 Stanford ChEM-H, Stanford University, Stanford, CA, USA. 24 Department of Immunology, Oslo University Hospital, Oslo, Norway. 25 Department of Bioengineering, University of Washington, Seattle, WA, USA. 26 Division of Gastroenterology and Hepatology, Department of Medicine, Stanford University, Stanford, CA, USA.